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Best invoicing apps

The Best Invoicing Apps for Agencies in 2026

An agency needs invoicing that survives multiple clients, projects and team members, not just a single freelancer sending the odd bill. The tools below are ranked on invoicing strength, project and time tracking, how many people can work in them, and price. Auritrack sits fourth on purpose: it is an AI bookkeeping app, not a dedicated billing suite, so we rank it honestly against apps built for the job.

1

FreshBooks

From ~$21/mo

FreshBooks is invoicing-first with the extras agencies actually use: estimates, a client portal, and time and project tracking to turn billable hours into invoices. Plans start around $21/month with extra team members about $11/month each, so a growing team adds up, but the client-billing workflow is the most complete here.

FreshBooks vs Auritrack
2

QuickBooks

From $35/mo

QuickBooks pairs strong invoicing with full double-entry accounting, payroll and tax integration, which matters once an agency has staff and real books to keep. It starts around $35/month with no free tier and can feel heavy if all you want is to bill clients.

QuickBooks vs Auritrack
3

Xero

From $25/mo

Xero is the pick for a bigger team because every plan includes unlimited users, alongside full accounting and automatic bank feeds. It starts at $25/month, but multi-currency is locked to the top Established plan and the cheapest tier caps invoices and bills, which agencies with many clients hit quickly.

Xero vs Auritrack
4

Auritrack

Free tier + AI from $3/mo

Auritrack ranks fourth here honestly: its invoicing is partial, aimed at small-business records and reports rather than a full client-billing and project workflow like FreshBooks or Xero. It earns its place on the other side of agency admin, using AI to log expenses by chat or statement import in any currency, on a free tier with AI features from $3/month.

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The verdict

For most agencies, FreshBooks is the top pick because invoicing, estimates, client portals and time tracking are its whole reason to exist. Choose Xero if you want unlimited team seats with full accounting, QuickBooks if payroll and tax integration matter, or pair a dedicated billing app with Auritrack to let AI handle the expense side of the books.

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Frequently Asked Questions

FreshBooks is the strongest all-round choice for agencies because it combines polished invoicing and estimates with a client portal and time and project tracking for billable work. If you have staff and want unlimited team seats, Xero is a better fit, and QuickBooks wins when payroll and tax integration matter.

None of the three dedicated invoicing suites here has a free tier: FreshBooks starts around $21/month, Xero at $25/month and QuickBooks at $35/month, and team seats add cost on top. Auritrack has a free tier for manual tracking, with AI logging on plans from $3/month, but it is a bookkeeping tool rather than a full agency billing platform.

We ranked on how strong the invoicing actually is for a multi-client, multi-person agency, plus project and time tracking, team seats, accounting depth and price. FreshBooks leads on client billing, Xero on unlimited users, and QuickBooks on full accounting and payroll. Auritrack is placed fourth because its invoicing is only partial.

Auritrack is fourth because it is not a dedicated invoicing tool: it supports small-business records and reports, not a full client-billing and project workflow like FreshBooks or Xero. Its strength is AI bookkeeping, where you chat a purchase or upload a statement and it categorizes everything in any currency, on a free tier with AI features from $3/month. For serious agency billing, pair it with one of the apps above.

Compare and switch

Let AI do the tracking

Auritrack does the bookkeeping for you — chat your spending or import a statement, in any currency. Start on the free tier and add the AI features when you want them.

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Rankings reflect our understanding of each product at the time of writing and may change; check each provider’s site for current pricing and features. Product names and trademarks belong to their respective owners. This page is general information, not financial advice.

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